Contents:

• INDRA Network Search
  • Available Service Endpoints
    • Node Existence Lookup
    • Direct Multi Interactors Lookup
    • Breadth First Search Endpoint
      • Signed Breadth First Search
    • Path Query Endpoint
  • Running the Service Locally
• Network Search Web UI
  • The Graphs Used
  • Search Options
    • Source and Target
    • Path Length
    • Max # Paths
    • Statement Types to Exclude
    • Node Namespaces to Include
    • Node Name Blacklist
    • Edge Hash Blacklist
    • Belief Score cut-off
    • Cull Highest Degree Node
    • Signed Search
    • Include Shared Regulators
    • Include Reverse Search
    • Weighted Search
    • Databases Only
    • Include Famplex Families and Complexes in Path Search
    • Expand search to FamPlex
    • Timeout
  • Result Categories
    • Complexes and Families
    • Common Targets
    • Shared Regulators
    • N Edge Paths
  • Detailed Results
  • Download Results